Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs7551896 chr1:247214470 C/T 1.32E-7 179 13.1 11.77 3.87 KM Plot
ESCA rs75693229 chr8:8590926 G/A 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs75833152 chr18:3342173 T/C 4.73E-6 180 13.1 14.23 3.2 KM Plot
ESCA rs75955126 chr3:181966635 A/G 0 183 13.03 13.73 0.3 KM Plot
ESCA rs76079102 chr8:8591553 A/T 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs76168936 chr11:44598418 G/A 2.38E-6 183 13.37 15.07 4.27 KM Plot
ESCA rs7636148 chr3:181969294 C/T 0 184 13.03 16.58 0.3 KM Plot
ESCA rs76399848 chr9:90916380 T/C 5.56E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs76414504 chr8:120875738 G/C 3.52E-7 183 12.97 18.43 3.73 KM Plot
ESCA rs7666675 chr4:14018394 C/T 9.79E-7 184 4 13.43 13.1 KM Plot
ESCA rs76694698 chr12:123851904 T/G 3.56E-7 180 13.02 18.9 2.7 KM Plot
ESCA rs7669699 chr4:10028438 C/T 3.22E-5 182 13.33 13.58 8.1 KM Plot
ESCA rs76738833 chr1:3204844 G/A 2.95E-9 178 12.85 17.87 3.22 KM Plot
ESCA rs76760326 chr1:247198672 G/A 6.24E-7 181 13.03 17.23 3.87 KM Plot
ESCA rs76799185 chr7:135194266 G/C 5.91E-5 181 13.03 15.2 4.6 KM Plot